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Red Algae Thrive Despite Ancestor's Massive Loss of Genes

Rutgers Today | EurekAlert!

Coral.

Check out the Coralbase Website

Coral.

Doctoral Student Amanda Williams Is Awarded a Lorex (Limnology and Oceanography Research Exchange) Grant to Study Coral Biology in Haifa, Israel.

Galdieria.

Red Algae Steal Genes from Bacteria to Cope with Environmental Stresses

News Story in Rutgers Today


Galdieria.

Congratulations Julia Van Etten, for Receiving the FINESST Grant from NASA's Planetary Science Research Program to Support Your Research Project "Generating a Mechanistic Understanding of Horizontal Gene Transfer as a Driver of Cell Adaptation on the Early Earth."

Photo of Daniel Liu

Undergraduate Researcher Daniel LIU Presents His Findings at the ARESTY Poster Session.

Congratulations on a productive summer project.


Julia Van Etten

Microscopy Work of PhD Student Julia Van Etten Featured in Multiple Media Outlets

NJ TV NEWS: From Instagram to Rutgers lab, the art of microscopy

Rutgers Today: Student Turns Microorganisms Into Art, Becomes Vital Part of Genome Research

Daily Targum: Rutgers student's viral Instagram page combines microbiology with art

Couch Microscopy
Rutgers Student Turns Microorganisms Into Art, Becomes Vital Part of Genome Research

Ulva sea lettuce, image courtesy of Helena Abreu

Genome of Sea Lettuce that Spawns Massive "Green Tides" Decoded

News release in EurekAlert about De Clerck et al. "Insights into the evolution of multicellularity...", Current Biology ». National Fisherman

rendering of a picochlorum cell, image courtesy of Susanne Ruemmele

How Some Algae May Survive Climate Change

News release in EurekAlert about Foflonker et al. "Genomic analysis of Picochlorum species...", Molecular Biology and Evolution ».

coral

Bhattacharya Lab Awarded a Grant from the National Science Foundation for Research on Corals

Read more about the NSF award »


2019 Papers from the Bhattacharya Lab and Collaborators

Lee J, Kim D, Bhattacharya D, Yoon HS. 2019. Expansion of phycobilisome linker gene families in mesophilic red algae. Nature Communications [accepted].

Lord E, Pathmanathan JS, Corel E, Makarenkov V, Lopez P, Bouchard F, Bhattacharya D, Antoine PO, Guyader HL, Lapointe FJ, Bapteste E. 2019. Introducing trait networks to elucidate the fluidity of organismal evolution using palaeontological data. Genome Biology and Evolution Sep. 5. [Epub ahead of print]. DOI

Price DC, Goodenough UW, Roth R, Lee J-H, Kariyawasam T, Mutwil M, Ferrari C, Facchinelli F, Ball SG, Cenci U, Chan CX, Wagner NE, Yoon HS, Weber APM, Bhattacharya D. 2019. Analysis of an improved Cyanophora paradoxagenome assembly. DNA Research [in the press]. 

González-Pech RA, Bhattacharya D, Ragan MA, Chan CX. 2019. Genome evolution of coral reef symbionts as intracellular residents. Trends in Ecology and Evolution . DOI.

Ferrari C, Proost S, Janowski M, Becker J, Nikoloski Z, Bhattacharya D, Price D, Tohge T, Bar-Even A, Fernie A, Stitt M, Mutwil M. 2019. Kingdom-wide comparison reveals the evolution of diurnal gene expression in Archaeplastida. Nature Communications 10:737. DOI

Nissimov JI, Talmy D, Haramaty L, Fredricks H, Zelzion U, Eren M, Vandzura R, Laber C,  Schieler B, Johns C, More KD, Coolen MJL, Follows MJ, Bhattacharya D, Van Mooy BAS, Bidle KD. 2019. Biochemical diversity of glycosphingolipid biosynthesis as a driver of Coccolithovirus competitive ecology. Environmental Microbiology [accepted].

Bhattacharya D, Price DC. 2019. The algal tree of life from a genomics perspective. In: Photosynthesis in Algae: Photobiology and Molecular Systems, (eds.) Larkum A, Grossmann A, Raven J, Springer [in the press].

Shumaker A, Putnam HM, Qiu H, Price DC, Zelzion E, Harel A, Wagner NE, Gates R, Yoon HS, Bhattacharya D. 2019. Genome analysis of the rice coral Montipora capitata. Scientific Reports [accepted].

Lhee D, Ha J-S, Kim S, Park MG, Bhattacharya D, Yoon HS. 2019. Evolutionary dynamics of the chromatophore genome in three photosynthetic Paulinella species. Scientific Reports [in press].


2018 Papers from the Bhattacharya Lab and Collaborators

Wei G, Jia Q, Chen X, Köllner T, Bhattacharya D, Wong G, Gershenzon J, Chen F. 2018. Terpene biosynthesis in red algae is catalyzed by microbial type but not typical plant terpene synthases. Plant Physiology [accepted].

Stephens TG, Ragan MA, Bhattacharya D, Chan CX. 2018. Core genes in diverse dinoflagellate lineages include a wealth of conserved dark genes with unknown functions. Scientific Reports [accepted].

Lee J, Song HJ, Park SI, Lee YM, Jeong SY, Cho TO, Kim JH, Cho H-G, Choi CG, Nelson WA, Fredericq S, Bhattacharya D, Yoon HS. 2018. Mitochondrial and plastid genomes from coralline red algae provide insights into the incongruent evolutionary histories of organelles. Genome Biology and Evolution [in press].

Cenci U*, Qiu H*, Pillonel T, Cardol P, Remacle C, Colleoni C, Kadouche D, Chabi M, Greub G, Bhattacharya D*, Ball, SG*. 2018. Host-pathogen biotic interactions shaped vitamin K metabolism in Archaeplastida. Scientific Reports [accepted].
*Equal contribution.

Foflonker F, Mollegard D, Ong M, Yoon HS, Bhattacharya. 2018. Genomic analysis of Picochlorum species reveals how microalgae may adapt to variable environments. Molecular Biology and Evolution. September 2018.
doi

Bhattacharya D, Qiu H, Lee J, Yoon HS, Weber APM, Price DC. 2018. When less is more: red algae as models for studying gene loss and genome evolution in eukaryotes. Crit Rev Plant Sci. 37(1):1-19.
doi

Lee J, Yang EC, Graf L, Yang JH, Qi H,  Zelzion U, Chan CX, Stephens TG, Weber APM, Boo GH, Boo SM, Kim KM, Shin Y, Jung M, Lee SJ, Yim HS, Lee JY, Bhattacharya D*, Yoon HS*. 2018. Analysis of the draft genome of the red seaweed Gracilariopsis chorda provides insights into genome size evolution in Rhodophyta. Molecular Biology and Evolution 35(8):1869-1886.
*co-senior authors.
doi

Chan, C. X., Vaysberg, P., Price, D. C., Pelletreau, K. P., Rumpho, M. E., and Bhattacharya, D. 2018. Active host response to algal symbionts in the sea slug Elysia chlorotica. Mol. Biol. Evol. 35(7):1706-1711.
doi

Qiu, H., Rossoni, A., Weber, A. P. M., Yoon, H. S., and Bhattacharya, 2018. Unexpected conservation of the RNA splicing apparatus in the highly streamlined genome of Galdieria sulphuraria. BMC Evol. Biol. 18(1):41.
doi

Zhang, N., Cai, G., Price, D. C., Crouch, J. A., Gladieux, P., Hillman, B., Khang, C. H., LeBrun, M-. H., Lee, Y.- H., Luo, J., Qiu, H., Veltri, D., Wisecaver, J. H., Zhu, J., and Bhattacharya, D. 2018. Genome wide analysis of the transition to pathogenic lifestyles in Magnaporthales fungi. Sci. Rep. 8(1):5862.
doi

Méheust, R., Bhattacharya, D., Pathmanathan, J. S., McInerney, J. O., Lopez, P., and Bapteste, E. 2018. Formation of chimeric genes with essential functions at the origin of eukaryotes. BMC Biol. 16(1):30.
doi

De Clerck O, Kao S-M, Bogaert K, Blomme J, Foflonker F, Kwantes M, Vancaester E, Vanderstraeten L, Aydogdu E, Boesger J, Califano J, Charrier B6, Clewes R, Coates J, Del Cortona A, Fernandez-Pozo N, Gachon C, Hanikenne M, Lattermann L, Leliaert F, Liu X, Maggs C, Popper ZA, Raven J, Sterck L, Van Bel M, Wilhelmsson PKI, Bhattacharya D, Rensing SA, Van Der Straeten D, Vardi1 A, Vandepoele K, Van de Peer Y, Wichard T, Bothwell J. 2018. Insights into the evolution of multicellularity from the sea lettuce genome. Curr Biol. Volume 28, Issue 18, Pages 2921-2933.e5.
doi



2017 Papers from the Bhattacharya Lab and Collaborators

Brodie J, Ball SG, Bouget F-Y, Chan CX, De Clerck O, Cock M, Gachon C, Grossman AR, Mock T, Raven J, Saha M, Smith AG, Vardi A, Yoon HS, Bhattacharya D. 2017. Biotic interactions as drivers of algal origin and evolution. New Phytol. (Invited Tansley Review) doi:10.1111/nph.14760.
doi

Brawley SH, Blouin NA, Ficko-Blean E, Wheeler GL, Lohr M, Goodson HV, Jenkins JW,  Blaby-Haas CE,  Helliwell KE, Xin Chan Cl, Marriage TK, Bhattacharya D, Klein AS, Badis Y, Brodie , Cao Y, Collén J, Dittam SM, Gachon CMM, Green BR, Karpowicz SJ, Kim JW, Kudahl UJ, Lin S, Michel G, Mittag M, Olson BJSC, Pangilinan JL, Peng Y, Qiu H, Shuh S, Singer JT, Smith AG, Sprecher BN, Wagner V, Wang W, Wang Z-Y, Yan J,  Yarish C, Zäuner-Rieka S, Zhuang Y, Zou Y, Lindquist EA, Grimwood J, Barry KW,  Rokhsar DH, Schmutz J, Stiller JW, Grossman AR, Prochnik SE. 2017. Insights into the red algae and eukaryotic evolution from the genome of Porphyra umbilicalis (Bangiophyceae, Rhodophyta). Proc Natl Acad Sci USA. 114:E6361-E6370.
doi

Kim JI, Moore CE, Archibald JM, Bhattacharya D, Yi G, Yoon HS, Shin W. 2017. Evolutionary dynamics of cryptophyte plastid genomes. Genome Biol and Evol. 9:1859-1872.
doi

Qiu H, Zelzion E, Putnam HM, Gates RD, Wagner NE, Adams DK, Bhattacharya D. 2017. Discovery of SCORs: Anciently derived, highly conserved gene-associated repeats in stony corals. Genomics. Jun 17. doi:10.1016/j.ygeno.2017.06.003. [Epub ahead of print]
doi

Brodie J, Chan CX, De Clerck O, Cock JM, Coelho SM, Gachon C, Grossman AR, Mock T, Raven JA, Smith AG, Yoon HS, Bhattacharya D. 2017. The algal revolution. Trends Plant Sci. 22:726-738.
doi

Tripp EA, Zhang N, Schneider H, Huang Y, Mueller GM, Hu Z, Häggblom M, Bhattacharya D. 2017. Reshaping Darwin's tree: impact of the symbiome. Trends Ecol Evol. 32:552-555.
doi

Putnam HM, Adams DK, Zelzion E, Wagner NE, Qiu H, Mass T, Falkowski PG, Gates RD, Bhattacharya D. 2017. Divergent evolutionary histories of DNA markers in a Hawaiian population of the coral Montipora capitata. PeerJ. 5:e3319.
doi

Price DC, Bhattacharya D. 2017. Robust Dinoflagellata phylogeny inferred from public transcriptome databases. J Phycol. 53:725-729.
doi

Zhang R, Nowack EC, Price DC, Bhattacharya D, Grossman AR. 2017. Impact of light intensity and quality on chromatophore and nuclear gene expression in Paulinella chromatophora, an amoeba with nascent photosynthetic organelles. Plant J. 90:221-234.
doi

Qiu H, Lee JM, Yoon HS, Bhattacharya D. 2017. Hypothesis: gene-rich plastid genomes in red algae may be an outcome of nuclear genome reduction. J Phycol. 53:715-719.
doi

Cenci U, Bhattacharya D, Weber AP, Colleoni C, Subtil A, Ball SG. 2017. Biotic host-pathogen interactions as major drivers of plastid endosymbiosis. Trends Plant Sci. 22:316-328.
doi

Pandey RS, Saxena G, Bhattacharya D, Qiu H, Azad RK. 2017. Using complementary approaches to identify trans-domain nuclear gene transfers in the extremophile Galdieria sulphuraria (Rhodophyta). J Phycol. 53:7-11.
doi

Honig JA, Zelzion E, Wagner NE, Kubik C, Averello V, Vaiciunas J, Bhattacharya D, Bonos SA, Meyer WA. 2017. Microsatellite identification in perennial ryegrass using next-generation sequencing. Crop Sci. 57:1-10.
doi

dANIEL lIU

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Ulva sea lettuce, image courtesy of Helena Abreu
Ulva sea lettuce. Image courtesy of Helena Abreu

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