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Please contact sequencing specialist Nicole Wagner for questions about
sequencing projects.

Please contact Genome Cooperative
bioinformaticist Udi ZelZion for questions regarding data analysis
projects.



Featured paper:
Journal of Phycology
Jan 2015
Why we need more algal genomes


View Paper

If you are interested in joining the Genome Cooperative please contact:
  Debashish Bhattacharya
Tel: (848) 932-6218
Email: Bhattacharya@AESOP.Rutgers.edu
102 Foran Hall, 59 Dudley Rd
New Brunswick, NJ 08901

Some recent papers by members:
2015

J. Luo, H. Qiu, G. Cai, N. E. Wagner, D. Bhattacharya & N. Zhang Phylogenomic analysis uncovers the evolutionary history of nutrition and infection mode in rice blast fungus and other Magnaporthales. Scientific Reports 5, Article number: 9448.
doi
D. Bhattacharya, H. Qiu, D. Price and HS. Yoon. 2014. Why we need more algal genomes. Journal of Phycology. 51 1-5 Jan 2015.
doi | pdf
2014
A. Beck, P. K. Divakar, N. Zhang, M. C. Molina & L. Struwe. 2014. Evidence of ancient horizontal gene transfer between fungi and the terrestrial alga Trebouxia. Springer. Organisms Diversity & Evolution. 30 December 2014.
doi
Foflonker, F., D.C. Price, H. Qiu, B. Palenik, S. Wang, and D. Bhattacharya. 2014. Genome of the halotolerant green alga Picochlorum sp. reveals strategies for thriving under fluctuating environmental conditions. Environmental Microbiology [epub ahead of print] PMID: 24965277
doi
Harel, A., Y. Bromberg, P.G. Falkowski, and D. Bhattacharya. 2014. Evolutionary history of redox metal-binding domains across the tree of life. Proceedings of the National Academy of Sciences USA 111:7042-7047.
doi
Perrineau, M.M., E. Zelzion, J. Gross, D.C. Price, J. Boyd, and D. Bhattacharya. 2014. Evolution of salt tolerance in a laboratory reared population of Chlamydomonas reinhardtii. Environmental Microbiology 16:1755-1766.
doi
Perrineau, M.M., J. Gross, E. Zelzion, D.C. Price, O. Levitan, J. Boyd, and D. Bhattacharya. 2014. Using natural selection to explore the adaptive potential of Chlamydomonas reinhardtii. PLoS One 9:e92533.
doi
Rockwell NC, D. Duanmu, S.S. Martin, C. Bachy, D.C. Price, D. Bhattacharya, A.Z. Worden, and J.C. Lagarias. 2014. Eukaryotic algal phytochromes span the visible spectrum. Proceedings of the National Academy of Sciences USA 111:3871-3876.
doi
Roy RS, Price DC, Schliep A, Cai G, Korobeynikov A, Yoon HS, Yang EC, Bhattacharya D. 2014. Single cell genome analysis of an uncultured heterotrophic stramenopile. Scientific Reports 4:4780.
doi

2013
Bhattacharya, D., D.C. Price, C.X. Chan, H. Qiu, N. Rose, S. Ball, A.P. Weber, M. Cecilia Arias, B. Henrissat, P.M. Coutinho, A. Krishnan, S. Zäuner, S. Morath, F. Hilliou, A. Egizi, M.M. Perrineau, and H.S. Yoon. 2013. Genome of the red alga Porphyridium purpureum. Nature Communications 4:1941.
doi
Mass T, Drake JL, Haramaty L, Kim JD, Zelzion E, Bhattacharya D, Falkowski PG. 2013. Cloning and characterization of four novel coral acid-rich proteins that precipitate carbonates in vitro. Current Biology 23:1126-1131.
doi
Gross J, Wajid S, Price DC, Zelzion E, Li J, Chan CX, Bhattacharya D. 2013. Evidence for widespread exonic small RNAs in the glaucophyte alga Cyanophora paradoxa. PLoS One 8:e67669.
doi
Ball, S.G., A. Subtil, D. Bhattacharya, A. Moustafa, A.P.M. Weber, L. Gehre, C. Colleoni, M.-C. Arias, U. Cenci, and D. Dauvillée. 2013. Metabolic effectors secreted by bacterial pathogens: essential facilitators of plastid endosymbiosis? The Plant Cell. Jan;25(1):7-21
doi
Facchinelli, F., M. Pribil, U. Oster, N. Ebert, D. Bhattacharya, D. Leister, and A. Weber. 2013. Proteomic analysis of the Cyanophora paradoxa muroplast provides clues on early events in plastid endosymbiosis. Planta: 2013 Feb;237(2):637-51 epub ahead of print
doi

2012
Bhattacharya D., Price D.C., Yoon H.S., Yang E.C., Poulton N.J., Andersen R.A., Das S.P. Single cell genome analysis supports a link between phagotrophy and primary plastid endosymbiosis. Scientific Reports 2, 10 April 2012, Article number: 356 (open access).
doi
Price D.C., Chan C.X., Yoon H.S., Yang E.C., Qiu H., Weber A.P., Schwacke R., Gross J., Blouin N.A., Lane C., Reyes-Prieto A., Durnford D.G., Neilson J.A., Lang F.B., Gertraud Burger G., Steiner J.M., Löffelhardt W., Meuser J.E., Posewitz M.C., Ball S., Arias M.C., Henrissat B., Coutinho P.M., Rensing S.A., Symeonidi A., Doddapaneni H., Green B.R., Rajah V.D., Boore J., and Bhattacharya D. 2012.Cyanophora paradoxa genome elucidates origin of photosynthesis in algae and plants. Science 17 February 2012: Vol. 335 no. 6070 pp. 843-847
doi

2011
Adams, D.K., M.A. Sewell, R.C. Angerer, and L.M. Angerer. 2011. Rapid adaptation to food availability by a dopamine-mediated morphogenetic response. Nature Communications. 2:592
doi
Adams, D.K., D.J. McGillicuddy, L.M. Zamudio, A.M. Thurnherr, X. Liang, O. Rouxel, C.R. German, and L.M. Mullineaux. 2011. Surface-driven mesoscale eddies transport deep-sea products from hydrothermal vents. Science. 332:580-583
doi
Yoon HS, Price DC, Stepanauskas R, Rajah VD, Sieracki ME, Wilson WH, Yang EC, Duffy S, Bhattacharya D. 2011. Single cell genomics reveals trophic interactions and evolutionary history of uncultured protists. Science 332:714-717.
doi
2010
Kerry O'Donnell, Deanna A. Sutton, Michael G. Rinaldi, Brice A. J. Sarver, S. Arunmozhi Balajee, Hans-Josef Schroers, Richard C. Summerbell, Vincent A. R. G. Robert, Pedro W. Crous, Ning Zhang, Takayuki Aoki, Kyongyong Jung, Jongsun Park, Yong-Hwan Lee, Seogchan Kang, Bongsoo Park, and David M. Geiser. Internet-Accessible DNA Sequence Database for Identifying Fusaria from Human and Animal Infections. Journal of Clinical Microbiology, Oct. 2010, p. 3708–3718 Vol. 48, No. 10.
doi| pdf
Mullineaux, L.S., D. K. Adams, S.W. Mills, and S. E. Beaulieu. 2010. Larvae from afar colonize deep-sea hydrothermal vents after a catastrophic eruption. Proceedings of the National Academy of Sciences. 107:7829-7834.
doi
Laura M. Cortese, Joshua Honig, Chris Miller and Stacy A. Bonos. Genetic Diversity of Twelve Switchgrass Populations Using Molecular and Morphological Markers. 2010. BioEnergy Research Volume 3, Number 3, 262-271.
doi| pdf

2009
Assaf Vardi, Benjamin A. S. Van Mooy, Helen F. Fredricks, Kimberly J. Popendorf, Justin E. Ossolinski, Liti Haramaty, Kay D. Bidle. Viral Glycosphingolipids Induce Lytic Infection and Cell Death in Marine Phytoplankton. Science 326, 861 (2009).
doi|pdf
image of spawning Arbacia image of Pleopsidium image of a dogwood flower image of Montipora capitata microscopic image of Phaeodactylum tricornutum image of Xylaria P70-3 Copyright: Lena Struwe. Pine Barren gentian (Gentiana autumnalis), at Warren Grove Range, Pinelands, NJ, USA. microscopic image of Picochlorum image of Paulinella chromatophora
Arbacia
© Diane Adams
Pleopsidium
© Valérie Reeb
Dogwood flower
© Ning Zhang
Montipora
capitata

© Ruth Gates
Two cranberry
cultivars
© Nicholi Vorsa
Phaeodactylum
tricornutum

© Orly Levitan
Xylaria P70-3
© Ning Zhang
Gentiana
autumnalis
© Lena Struwe
Picochlorum
© Fatima Foflonker
Paulinella
chromatophora

© Hwan Su Yoon
Last updated April 7, 2015 - ruemmele@aesop.rutgers.edu